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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9739994_9784328_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9739994 - 9784328
Intron Length:
44335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGAGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTCTCTGAGG
Flanking Amino Acid:
SGFTGSHCEKDIDECAEGII
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
77.9
36.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
67.9
0.4
1.1
65.5
40.2
Minor 5ss
37.2
-1.4
3.4
56.5
47.6
Minor BPS
51.7
-0
2
67.05
41.1

Associated Gene:

Gene:
NELL1
Ensembl Gene ID:
ENSAPLG00000008616
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008960
9721327 - 10004429
283103
ENSAPLT00000042078
9721327 - 10006029
284703
ENSAPLT00000039500
9721390 - 10004429
283040
ENSAPLT00000032625
9721390 - 10004429
283040
ENSAPLT00000031196
9721390 - 10006029
284640
ENSAPLT00000046758
9721390 - 10004429
283040