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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9860146_9915680_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9860146 - 9915680
Intron Length:
55535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
CTGACTGTGACT
Flanking Amino Acid:
SVQGDSAYCEDIDECAAKMH
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
76.5
34.2
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
86.5
0.82
0.7
81.4
23.6
Minor 5ss
38
-1.3
3
48.1
47.6
Minor BPS
48.1
-0
2.1
66.99
44.5

Associated Gene:

Gene:
NELL1
Ensembl Gene ID:
ENSAPLG00000008616
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008960
9721327 - 10004429
283103
ENSAPLT00000042078
9721327 - 10006029
284703
ENSAPLT00000032625
9721390 - 10004429
283040
ENSAPLT00000031196
9721390 - 10006029
284640
ENSAPLT00000047539
9721390 - 10004429
283040
ENSAPLT00000029717
9721390 - 10004429
283040
ENSAPLT00000044680
9723279 - 10004429
281151