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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9860146_9925658_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9860146 - 9925658
Intron Length:
65513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
CTGACTGTGACT
Flanking Amino Acid:
PENQCCSVCRDIDECAAKMH
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
68.8
43.8
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
86.5
0.82
0.7
81.4
23.6
Minor 5ss
37.2
-1.4
3
46.7
48.6
Minor BPS
48.1
-0
2.1
66.99
44.5

Associated Gene:

Gene:
NELL1
Ensembl Gene ID:
ENSAPLG00000008616
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039500
9721390 - 10004429
283040