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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9925759_9932441_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9925759 - 9932441
Intron Length:
6683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TATTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AGTCATTTAAAA
Flanking Amino Acid:
VLTKSCRECRNGVLVKVTET
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
76
34.8
Major BPS
100
1.24
0.5
100
0
Major PPT
87.2
0.84
0.8
84.8
35.4
Minor 5ss
46
-0.4
2.7
58.2
40.5
Minor BPS
52.9
0.09
1.6
62.83
36.3

Associated Gene:

Gene:
NELL1
Ensembl Gene ID:
ENSAPLG00000008616
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032625
9721390 - 10004429
283040
ENSAPLT00000046758
9721390 - 10004429
283040
ENSAPLT00000031196
9721390 - 10006029
284640
ENSAPLT00000044680
9723279 - 10004429
281151
ENSAPLT00000042078
9721327 - 10006029
284703
ENSAPLT00000029717
9721390 - 10004429
283040
ENSAPLT00000039500
9721390 - 10004429
283040
ENSAPLT00000047539
9721390 - 10004429
283040
ENSAPLT00000008960
9721327 - 10004429
283103