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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9932516_9934797_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9932516 - 9934797
Intron Length:
2282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTACATCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTATTTTTAACC
Flanking Amino Acid:
VESQCCKICKAKCIYGGKVL
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.7
33.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
75.9
0.58
0.9
69.4
35.2
Minor 5ss
30.1
-2.3
2.5
26.5
36
Minor BPS
79.9
0.92
1
82.59
30.6

Associated Gene:

Gene:
NELL1
Ensembl Gene ID:
ENSAPLG00000008616
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032625
9721390 - 10004429
283040
ENSAPLT00000046758
9721390 - 10004429
283040
ENSAPLT00000031196
9721390 - 10006029
284640
ENSAPLT00000044680
9723279 - 10004429
281151
ENSAPLT00000029717
9721390 - 10004429
283040
ENSAPLT00000042078
9721327 - 10006029
284703
ENSAPLT00000008960
9721327 - 10004429
283103
ENSAPLT00000039500
9721390 - 10004429
283040
ENSAPLT00000047539
9721390 - 10004429
283040