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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9935889_9941086_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9935889 - 9941086
Intron Length:
5198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTACC
5'SS Class:
major
3'SS Sequence:
CTTTCATTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GTTACTTTCATT
Flanking Amino Acid:
QELLAKMTAKLNYAETRLSQ
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
72.7
35.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
82.2
0.72
0.7
76.9
30.7
Minor 5ss
37.3
-1.4
3
46.6
35.6
Minor BPS
59
0.36
1.8
77.11
39.8

Associated Gene:

Gene:
NELL1
Ensembl Gene ID:
ENSAPLG00000008616
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039500
9721390 - 10004429
283040
ENSAPLT00000047539
9721390 - 10004429
283040
ENSAPLT00000031196
9721390 - 10006029
284640
ENSAPLT00000046758
9721390 - 10004429
283040
ENSAPLT00000029717
9721390 - 10004429
283040
ENSAPLT00000044680
9723279 - 10004429
281151
ENSAPLT00000008960
9721327 - 10004429
283103
ENSAPLT00000042078
9721327 - 10006029
284703