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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9935889_9947522_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9935889 - 9947522
Intron Length:
11634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCATTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GTTACTTTCATT
Flanking Amino Acid:
QRNRKHGFFKLNYAETRLSQ
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.4
39.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
82.2
0.72
0.7
76.9
30.7
Minor 5ss
35.7
-1.6
3.3
47.1
48.3
Minor BPS
59
0.36
1.8
77.11
39.8

Associated Gene:

Gene:
NELL1
Ensembl Gene ID:
ENSAPLG00000008616
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032625
9721390 - 10004429
283040