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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9941170_9941432_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9941170 - 9941432
Intron Length:
263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TTCCTCTTTTGAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTCTTTTCAACT
Flanking Amino Acid:
YIMQCPNLNRTCPTCSDFLS
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
67.4
0.39
1.7
80.3
31.7
Minor 5ss
38.3
-1.3
2.8
51.5
39
Minor BPS
68.6
0.66
1.5
83.3
38.2

Associated Gene:

Gene:
NELL1
Ensembl Gene ID:
ENSAPLG00000008616
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039500
9721390 - 10004429
283040
ENSAPLT00000047539
9721390 - 10004429
283040
ENSAPLT00000046758
9721390 - 10004429
283040
ENSAPLT00000031196
9721390 - 10006029
284640
ENSAPLT00000044680
9723279 - 10004429
281151
ENSAPLT00000029717
9721390 - 10004429
283040
ENSAPLT00000042078
9721327 - 10006029
284703
ENSAPLT00000008960
9721327 - 10004429
283103