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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9941506_9947522_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9941506 - 9947522
Intron Length:
6017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTACAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TCTTCTTTTACA
Flanking Amino Acid:
QRNRKHGFFKGVIQDVKVVF
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.4
39.5
Major BPS
74.2
0.6
1
67
39.4
Major PPT
71.6
0.49
1
74.5
33.1
Minor 5ss
35.7
-1.6
3.3
47.1
48.3
Minor BPS
71.5
0.67
1.6
78.96
37.6

Associated Gene:

Gene:
NELL1
Ensembl Gene ID:
ENSAPLG00000008616
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031196
9721390 - 10006029
284640
ENSAPLT00000046758
9721390 - 10004429
283040
ENSAPLT00000029717
9721390 - 10004429
283040
ENSAPLT00000044680
9723279 - 10004429
281151
ENSAPLT00000008960
9721327 - 10004429
283103
ENSAPLT00000042078
9721327 - 10006029
284703
ENSAPLT00000039500
9721390 - 10004429
283040
ENSAPLT00000047539
9721390 - 10004429
283040