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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9947620_9965148_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9947620 - 9965148
Intron Length:
17529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTCCCTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
ATTCCCTCTACA
Flanking Amino Acid:
SHLLLHVDCNRIYERIIDPP
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
75.8
0.64
1
65.8
41
Major PPT
80.3
0.68
0.8
73.3
30.9
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
57
0.21
1.9
72.12
39

Associated Gene:

Gene:
NELL1
Ensembl Gene ID:
ENSAPLG00000008616
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031196
9721390 - 10006029
284640
ENSAPLT00000044680
9723279 - 10004429
281151
ENSAPLT00000029717
9721390 - 10004429
283040
ENSAPLT00000042078
9721327 - 10006029
284703
ENSAPLT00000008960
9721327 - 10004429
283103
ENSAPLT00000039500
9721390 - 10004429
283040
ENSAPLT00000047539
9721390 - 10004429
283040
ENSAPLT00000032625
9721390 - 10004429
283040
ENSAPLT00000046758
9721390 - 10004429
283040