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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9979806_10000117_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9979806 - 10000117
Intron Length:
20312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
ATAAAATTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTTTGAATA
Flanking Amino Acid:
HNASKAFLFQDIEREIHAAP
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
75.1
35.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
60.2
0.23
1
56
43.6
Minor 5ss
32.3
-2
3.1
41.7
45
Minor BPS
70.5
0.64
1.3
79.42
30.4

Associated Gene:

Gene:
NELL1
Ensembl Gene ID:
ENSAPLG00000008616
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032625
9721390 - 10004429
283040
ENSAPLT00000046758
9721390 - 10004429
283040
ENSAPLT00000031196
9721390 - 10006029
284640
ENSAPLT00000044680
9723279 - 10004429
281151
ENSAPLT00000029717
9721390 - 10004429
283040
ENSAPLT00000042078
9721327 - 10006029
284703
ENSAPLT00000008960
9721327 - 10004429
283103
ENSAPLT00000039500
9721390 - 10004429
283040
ENSAPLT00000047539
9721390 - 10004429
283040