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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_10039275_10040665_F

Intron Information:

Intron Rank:
125105
Intron Class:
major
Intron Phase:
Intron Coordinates:
10039275 - 10040665
Intron Length:
1391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
TTGTAATTAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
AAGTATTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
72.1
0.5
1
67.5
42.4
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
54.5
0.14
1.6
61.4
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017373
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027637
10039205 - 10041665
2461