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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_10086456_10086545_F

Intron Information:

Intron Rank:
140556
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
10086456 - 10086545
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAGGCTGC
5'SS Class:
weak_major
3'SS Sequence:
GGTGATTTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTTAT
U12 Branch Point Sequence:
ACTCTATGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.5
0.2
1.2
48.7
43.4
Major BPS
73.5
0.58
1.2
63.7
43.9
Major PPT
69.8
0.45
1
65.4
45.2
Minor 5ss
44.1
-0.6
3.2
54.4
44.4
Minor BPS
50.8
0.1
1.7
69.9
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025672
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045094
10086416 - 10190990
104575