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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_10086617_10189758_F

Intron Information:

Intron Rank:
140557
Intron Class:
major
Intron Phase:
Intron Coordinates:
10086617 - 10189758
Intron Length:
103142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CAGTTTTGAGTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
77.5
0.68
1
79.6
33
Major PPT
82.9
0.74
0.9
80.2
37.3
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
46
-0.2
1.6
56.87
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025672
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045094
10086416 - 10190990
104575