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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_10246505_10246894_F

Intron Information:

Intron Rank:
144462
Intron Class:
major
Intron Phase:
Intron Coordinates:
10246505 - 10246894
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGAGGGA
5'SS Class:
major
3'SS Sequence:
ACTGCTCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATGTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
57.3
42
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
67.3
0.39
0.9
58.5
37.8
Minor 5ss
26.5
-2.7
3.7
37.6
47.2
Minor BPS
73
0.8
1.7
88.57
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027849
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033062
10245900 - 10303278
57379
ENSAPLT00000029126
10245900 - 10324896
78997
ENSAPLT00000023082
10245900 - 10294867
48968