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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_10246931_10247204_F

Intron Information:

Intron Rank:
144463
Intron Class:
major
Intron Phase:
Intron Coordinates:
10246931 - 10247204
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATCCAT
U12 Branch Point Sequence:
ATATCCATATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
71
34.4
Major BPS
69.5
0.49
1.2
78.7
34.9
Major PPT
74.7
0.56
1
79.3
26.6
Minor 5ss
28.7
-2.4
3.5
34
43.2
Minor BPS
56.5
0.28
1.9
76.52
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027849
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029126
10245900 - 10324896
78997
ENSAPLT00000023082
10245900 - 10294867
48968
ENSAPLT00000033062
10245900 - 10303278
57379