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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_1028896_1071818_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1028896 - 1071818
Intron Length:
42923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
ATATTTGTAAAT
Flanking Amino Acid:
GDWFGEKALQGEDVRTANVI
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
78.8
35.5
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
90.8
0.92
0.7
88.9
28.1
Minor 5ss
34.9
-1.7
3.2
42.4
44.3
Minor BPS
49.7
0.06
2
71.8
39.2

Associated Gene:

Gene:
PRKG1
Ensembl Gene ID:
ENSAPLG00000003140
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003222
738722 - 1157771
419050