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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_10350176_10350555_F

Intron Information:

Intron Rank:
133140
Intron Class:
major
Intron Phase:
Intron Coordinates:
10350176 - 10350555
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TCCTTCCTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
0.9
72
34.3
Major BPS
72
0.55
1
71.8
31.4
Major PPT
87.7
0.85
0.7
80.8
31.1
Minor 5ss
36.8
-1.5
2.9
43.8
38
Minor BPS
62.8
0.4
1.7
71.21
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021588
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032624
10348335 - 10351080
2746