Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_10404086_10405592_F

Intron Information:

Intron Rank:

150405

Intron Class:

major

Intron Phase:

Intron Coordinates:

10404086 - 10405592

Intron Length:

1507

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGCTTT

5'SS Class:

strong_major

3'SS Sequence:

TTGAACTCCGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTAAC

U12 Branch Point Sequence:

TGCCTTTGAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

37.9

Major BPS

76.8

0.67

0.9

75.9

Major PPT

69.1

0.43

0.9

62.4

39.3

Minor 5ss

48.7

-0.1

3.1

73.3

43.6

Minor BPS

56.8

0.29

1.4

70.54

40.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030841

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017756

10393152 - 10414787

21636