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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_10486241_10487857_R

Intron Information:

Intron Rank:
136360
Intron Class:
major
Intron Phase:
Intron Coordinates:
10486241 - 10487857
Intron Length:
1617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
TTTTTCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
61.3
0.28
1
62
30.6
Major PPT
91.6
0.94
0.6
87.6
22.6
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
75.4
0.79
1.7
86.69
32.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020774
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045434
10484234 - 10488852
4619