About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_106292_107192_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
106292 - 107192
Intron Length:
901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTAAATGTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TCTCCTTTAAAT
Flanking Amino Acid:
IYRGIINDPYSEFMVEEHKL
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
75.4
34.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
73.6
0.53
1
70.4
44.3
Minor 5ss
31.9
-2.1
3.2
42.1
45
Minor BPS
71.5
0.75
1.4
82.63
38.5

Associated Gene:

Gene:
TUBGCP2
Ensembl Gene ID:
ENSAPLG00000013602
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014248
85796 - 118596
32801