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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_10682252_10735618_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
10682252 - 10735618
Intron Length:
53367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATGTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTCTTTTACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.8
38.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81
0.7
0.9
76.3
36.8
Minor 5ss
40.5
-1.1
3.2
58.3
46.4
Minor BPS
77.6
0.86
1.5
87.29
30.4

Associated Gene:

Gene:
NRG3
Ensembl Gene ID:
ENSAPLG00000011354
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046515
10681603 - 10801886
120284