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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_10703215_10735618_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
10703215 - 10735618
Intron Length:
32404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATGTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTCTTTTACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81
0.7
0.9
76.3
36.8
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
77.6
0.86
1.5
87.29
30.4

Associated Gene:

Gene:
NRG3
Ensembl Gene ID:
ENSAPLG00000011354
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039502
10699365 - 10801886
102522