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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_10775410_10779674_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10775410 - 10779674
Intron Length:
4265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAGCC
5'SS Class:
major
3'SS Sequence:
TTTCTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTTCCTTACAT
Flanking Amino Acid:
MLCAAFYFKTKKQTKQIHEQ
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
69.7
33.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.7
0.89
0.6
85.1
22.4
Minor 5ss
33.4
-1.9
3.4
43.5
37.7
Minor BPS
69.6
0.69
1.7
85.06
41.4

Associated Gene:

Gene:
NRG3
Ensembl Gene ID:
ENSAPLG00000011354
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046515
10681603 - 10801886
120284
ENSAPLT00000039502
10699365 - 10801886
102522
ENSAPLT00000018069
10681603 - 10801886
120284
ENSAPLT00000011806
10575777 - 10801886
226110