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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_10787602_10795842_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10787602 - 10795842
Intron Length:
8241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
ATGTTGTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACTGTACCC
Flanking Amino Acid:
DRGTQPIKQHRSLSSCCSPG
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
70.1
0.45
0.9
62.2
43.8
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
49.2
-0
2.3
70.49
41.3

Associated Gene:

Gene:
NRG3
Ensembl Gene ID:
ENSAPLG00000011354
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039502
10699365 - 10801886
102522
ENSAPLT00000018069
10681603 - 10801886
120284
ENSAPLT00000011806
10575777 - 10801886
226110
ENSAPLT00000046515
10681603 - 10801886
120284