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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_10796014_10801378_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10796014 - 10801378
Intron Length:
5365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTATTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTC
Flanking Amino Acid:
ITDQDTMPCHGYSSSGLKTP
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.9
87
30
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.3
0.91
0.7
88.9
27.7
Minor 5ss
37
-1.5
2.8
43.1
43.9
Minor BPS
59.3
0.27
1.8
74.91
35.9

Associated Gene:

Gene:
NRG3
Ensembl Gene ID:
ENSAPLG00000011354
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039502
10699365 - 10801886
102522
ENSAPLT00000018069
10681603 - 10801886
120284
ENSAPLT00000011806
10575777 - 10801886
226110
ENSAPLT00000046515
10681603 - 10801886
120284