About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11142988_11144485_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11142988 - 11144485
Intron Length:
1498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTAG
5'SS Class:
strong_major
3'SS Sequence:
TTGAATCTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCATTGAATC
Flanking Amino Acid:
KAYQLWQPNQCYATRVRTGV
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
75.6
36.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
68.4
0.42
1
62.7
42.8
Minor 5ss
36.1
-1.6
3.3
45.9
49.3
Minor BPS
56.2
0.18
1.6
69.85
35.1

Associated Gene:

Gene:
GHITM
Ensembl Gene ID:
ENSAPLG00000011392
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011919
11142832 - 11152287
9456