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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11147156_11148253_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11147156 - 11148253
Intron Length:
1098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
GCTGTTCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTGTTCTTACAG
Flanking Amino Acid:
MSLMTKGSWLAIGATFAAMI
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
70.3
36.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
79.4
0.66
0.9
72.2
38
Minor 5ss
44.3
-0.6
2.8
53.8
44.4
Minor BPS
49.7
-0.1
1.8
55.5
46

Associated Gene:

Gene:
GHITM
Ensembl Gene ID:
ENSAPLG00000011392
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011919
11142832 - 11152287
9456