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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11148363_11149445_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11148363 - 11149445
Intron Length:
1083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTGGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCAAA
U12 Branch Point Sequence:
TGTTCCAAACCT
Flanking Amino Acid:
AKHLAWMMHSGVMGAVVAPL
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
72.3
37.8
Major BPS
62.7
0.32
1.2
71
33.2
Major PPT
68.4
0.42
1
65
41.2
Minor 5ss
39.1
-1.2
3.1
52.5
44.7
Minor BPS
49.7
0.05
2.2
77.67
44.4

Associated Gene:

Gene:
GHITM
Ensembl Gene ID:
ENSAPLG00000011392
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011919
11142832 - 11152287
9456