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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11149635_11150185_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11149635 - 11150185
Intron Length:
551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAAGTAT
5'SS Class:
major
3'SS Sequence:
TGTTCTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTCATCAAGG
Flanking Amino Acid:
GLGFVLASSIGSMFLPPTSA
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
70.7
35.4
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
85.4
0.8
0.8
77.5
36.9
Minor 5ss
37.9
-1.4
3.5
51.8
47.3
Minor BPS
48.3
-0.2
2.2
60.74
46.7

Associated Gene:

Gene:
GHITM
Ensembl Gene ID:
ENSAPLG00000011392
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011919
11142832 - 11152287
9456