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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11150358_11151190_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11150358 - 11151190
Intron Length:
833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TCTTCTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTATGTTCAACA
Flanking Amino Acid:
YGVTKYDPINACMGIYTDTL
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1.3
81.8
38.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
82.6
0.73
0.7
76.7
32
Minor 5ss
42.6
-0.8
2.9
56
41.5
Minor BPS
57
0.22
2
72.35
39.8

Associated Gene:

Gene:
GHITM
Ensembl Gene ID:
ENSAPLG00000011392
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011919
11142832 - 11152287
9456