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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11151316_11152046_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
3UTR
Intron Coordinates:
11151316 - 11152046
Intron Length:
731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTGTCTGC
5'SS Class:
weak_major
3'SS Sequence:
GTCTTTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
AATTGTTGAATA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.7
0.14
1.3
49
42.7
Major BPS
76.8
0.67
1
66
40.9
Major PPT
85
0.79
0.8
76.9
37.4
Minor 5ss
39.2
-1.2
3.1
51.5
45.1
Minor BPS
50.9
0.02
1.8
63.63
36.8

Associated Gene:

Gene:
GHITM
Ensembl Gene ID:
ENSAPLG00000011392
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011919
11142832 - 11152287
9456