About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11162951_11169287_F

Intron Information:

Intron Rank:
140020
Intron Class:
major
Intron Phase:
Intron Coordinates:
11162951 - 11169287
Intron Length:
6337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACACTT
5'SS Class:
major
3'SS Sequence:
TTTTCACCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATTTTTTCACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
75.5
40.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
76.9
0.61
0.7
75.2
28.8
Minor 5ss
43.4
-0.7
3.2
65.6
45.4
Minor BPS
53.1
0.08
1.8
68.17
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025275
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034714
11162827 - 11171875
9049