Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11184086_11184561_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11184086 - 11184561

Intron Length:

476

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

GTTTTGATTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TTTGTTTTGATT

Flanking Amino Acid:

CFKLCCCLAAIQANYAPYFF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.2

0.88

0.9

84.2

26.3

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

80.5

0.69

0.9

74.1

40.3

Minor 5ss

37.7

-1.4

2.7

46.1

36.1

Minor BPS

66.4

0.6

1.3

81.5

34.7

Associated Gene:

Gene:

CDHR1

Ensembl Gene ID:

ENSAPLG00000011604

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012202

11183893 - 11227649

43757