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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11192840_11193696_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11192840 - 11193696
Intron Length:
857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGAGTAC
5'SS Class:
major
3'SS Sequence:
TATTGGTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTCTCTAACA
Flanking Amino Acid:
VTLIEELDREKEDEIEVIVS
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.1
63.3
37.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.8
0.67
1
72.4
42.2
Minor 5ss
35
-1.7
3.6
48.7
47.8
Minor BPS
69.6
0.61
1.6
79.78
36.5

Associated Gene:

Gene:
CDHR1
Ensembl Gene ID:
ENSAPLG00000011604
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012202
11183893 - 11227649
43757