Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11195173_11195580_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11195173 - 11195580

Intron Length:

408

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTTGGTGAA

5'SS Class:

major

3'SS Sequence:

TTTCTGCTCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAC

U12 Branch Point Sequence:

TCTGTCTGAGTC

Flanking Amino Acid:

NTPYIVQVPENTPSGSSIFK

Intron Amino Acid Position:

193

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.1

0.57

1.2

69.7

36.7

Major BPS

90.1

0.99

0.7

91.6

20.3

Major PPT

81.8

0.72

0.8

76.1

32.6

Minor 5ss

-2.6

3.1

31.6

42.8

Minor BPS

47.7

-0.2

1.7

58.18

41.5

Associated Gene:

Gene:

CDHR1

Ensembl Gene ID:

ENSAPLG00000011604

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012202

11183893 - 11227649

43757