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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11199242_11201765_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11199242 - 11201765
Intron Length:
2524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
CATTTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTGATCTCAGCA
Flanking Amino Acid:
YGYVYEDTLAGSEVLTVVAL
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
72.9
36.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
77.9
0.63
0.8
69.7
36.4
Minor 5ss
37.5
-1.4
3.3
56.3
41.9
Minor BPS
49.4
-0
1.8
64.11
42.2

Associated Gene:

Gene:
CDHR1
Ensembl Gene ID:
ENSAPLG00000011604
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012202
11183893 - 11227649
43757