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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11207483_11210380_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11207483 - 11210380
Intron Length:
2898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTGCTTTTATT
Flanking Amino Acid:
LKITVNDSDQGANAKFNLRL
Intron Amino Acid Position:
437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.5
32.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
85.1
0.79
0.7
80
30.8
Minor 5ss
32.1
-2
3.1
40.8
45.4
Minor BPS
58.6
0.35
1.7
74.98
42.6

Associated Gene:

Gene:
CDHR1
Ensembl Gene ID:
ENSAPLG00000011604
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012202
11183893 - 11227649
43757