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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11210534_11213735_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11210534 - 11213735
Intron Length:
3202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTCTG
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TTTGTAGTAATT
Flanking Amino Acid:
YEKFKVLTFKLLAIEVNTPE
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.1
65.7
45.6
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
88.6
0.87
0.6
89
20.1
Minor 5ss
36.8
-1.5
3.2
50.2
46
Minor BPS
48.5
-0
2.3
76.06
41.3

Associated Gene:

Gene:
CDHR1
Ensembl Gene ID:
ENSAPLG00000011604
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012202
11183893 - 11227649
43757