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Intron Name: Anas_platyrhynchos_platyrhynchos_6_11213901_11216032_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11213901 - 11216032

Intron Length:

2132

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTAAGTTTA

5'SS Class:

major

3'SS Sequence:

TTCTTTTTTTAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTTAT

U12 Branch Point Sequence:

ACTCTCTTATTT

Flanking Amino Acid:

PGGSNVVAITATDPDSGLWG

Intron Amino Acid Position:

543

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.64

1.1

77.4

33.6

Major BPS

79.1

0.72

69.3

38.4

Major PPT

84.3

0.77

0.9

90.2

22.9

Minor 5ss

46.7

-0.3

2.8

68.1

42.7

Minor BPS

57.5

0.31

1.6

71.06

40.4

Associated Gene:

Gene:

CDHR1

Ensembl Gene ID:

ENSAPLG00000011604

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012202

11183893 - 11227649

43757