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Intron Name: Anas_platyrhynchos_platyrhynchos_6_11218939_11219875_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11218939 - 11219875

Intron Length:

937

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGAAAC

5'SS Class:

strong_major

3'SS Sequence:

TTTCCCCAACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATAACAT

U12 Branch Point Sequence:

GTTTCCCCAACC

Flanking Amino Acid:

MIIGSPVKIEAIDQDAEEPN

Intron Amino Acid Position:

642

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

0.8

80.3

26.9

Major BPS

62.2

0.3

1.1

69.4

35.8

Major PPT

70.7

0.47

0.9

64.1

Minor 5ss

28.3

-2.5

2.8

33.7

41.9

Minor BPS

61.9

0.35

1.9

76.97

38.6

Associated Gene:

Gene:

CDHR1

Ensembl Gene ID:

ENSAPLG00000011604

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012202

11183893 - 11227649

43757