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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11220131_11226458_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11220131 - 11226458
Intron Length:
6328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TACTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTCAT
U12 Branch Point Sequence:
TACTCTTTTACA
Flanking Amino Acid:
AVLKIDITEETLHKGPMAAF
Intron Amino Acid Position:
727

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
68.2
0.45
1.1
69.4
37.7
Major PPT
85.2
0.79
0.8
79.6
32
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
65.4
0.48
1.6
71.9
40.1

Associated Gene:

Gene:
CDHR1
Ensembl Gene ID:
ENSAPLG00000011604
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012202
11183893 - 11227649
43757