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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_112236_115386_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
112236 - 115386
Intron Length:
3151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTAGCG
5'SS Class:
major
3'SS Sequence:
CTTTTCCCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTTTTCCCAACA
Flanking Amino Acid:
SVTANSNVQQPLELTRKVLR
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
56.4
41.1
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
78.6
0.64
0.8
74.2
29.5
Minor 5ss
29.7
-2.3
3.4
39.8
45.7
Minor BPS
55.5
0.17
1.9
71.95
40.1

Associated Gene:

Gene:
TUBGCP2
Ensembl Gene ID:
ENSAPLG00000013602
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014248
85796 - 118596
32801