Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11234261_11236357_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11234261 - 11236357

Intron Length:

2097

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGCAAT

5'SS Class:

strong_major

3'SS Sequence:

CTCTCCCCCACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTGAT

U12 Branch Point Sequence:

CTCTCCCCCACA

Flanking Amino Acid:

YALKLLRAFNVSTQPISEET

Intron Amino Acid Position:

344

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

79.7

35.3

Major BPS

63.8

0.34

1.2

54.7

43.1

Major PPT

0.56

0.7

68.5

25.3

Minor 5ss

41.2

-1

2.9

54.5

43.9

Minor BPS

45.2

-0.3

2.3

59.96

45.8

Associated Gene:

Gene:

LRIT2

Ensembl Gene ID:

ENSAPLG00000011945

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012428

11233443 - 11237713

4271