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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11237140_11237465_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11237140 - 11237465
Intron Length:
326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACACAT
U12 Branch Point Sequence:
TGGTATGTGACC
Flanking Amino Acid:
GCSCSQDSFGRSLLCMSALL
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
69.9
0.49
1
75.2
29.8
Major PPT
86.8
0.83
0.6
85.9
21
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
45.8
-0.3
2.2
58.87
40.6

Associated Gene:

Gene:
LRIT2
Ensembl Gene ID:
ENSAPLG00000011945
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012428
11233443 - 11237713
4271