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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_1124682_1139105_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1124682 - 1139105
Intron Length:
14424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTAAC
5'SS Class:
major
3'SS Sequence:
TACTTTACCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTGCTTCTAACC
Flanking Amino Acid:
GVGGFGRVELVQLKSEESKT
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
74.1
36.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
63.1
0.29
1.1
61.2
38.9
Minor 5ss
34.8
-1.7
3
41.6
39.5
Minor BPS
55.8
0.16
1.7
67.88
37.7

Associated Gene:

Gene:
PRKG1
Ensembl Gene ID:
ENSAPLG00000003140
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003222
738722 - 1157771
419050