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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11248259_11255982_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11248259 - 11255982
Intron Length:
7724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTTACAT
Flanking Amino Acid:
RADGAQLNGTVHQEISSDGM
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
35
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.7
0.8
0.7
80.4
24.9
Minor 5ss
49.9
-0
2.4
66.4
45.1
Minor BPS
56.1
0.27
1.7
77.18
39.4

Associated Gene:

Gene:
LRIT1
Ensembl Gene ID:
ENSAPLG00000011953
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012436
11247273 - 11262652
15380