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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11256289_11259546_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11256289 - 11259546
Intron Length:
3258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTTAG
U12 Branch Point Sequence:
TTTCTTTTGACA
Flanking Amino Acid:
FPNDNSKIILGLQDNPWVCD
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25
Major BPS
46.8
-0.2
1.6
43.4
41.5
Major PPT
85.5
0.8
0.9
83.5
31.6
Minor 5ss
33
-1.9
3.2
42.9
44.7
Minor BPS
71.5
0.67
1.1
79.17
30

Associated Gene:

Gene:
LRIT1
Ensembl Gene ID:
ENSAPLG00000011953
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012436
11247273 - 11262652
15380