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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11260014_11262530_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11260014 - 11262530
Intron Length:
2517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCCAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATACAA
U12 Branch Point Sequence:
CTTTCCCCACCA
Flanking Amino Acid:
FHSLSEGTKARTVLCNDPEM
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
66.8
40.4
Major BPS
57
0.17
0.9
65
30.8
Major PPT
74.7
0.56
0.9
67.4
33.8
Minor 5ss
43.3
-0.7
2.9
55.6
48.6
Minor BPS
48.5
-0.1
2.2
68.3
43.9

Associated Gene:

Gene:
LRIT1
Ensembl Gene ID:
ENSAPLG00000011953
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012436
11247273 - 11262652
15380