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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11276664_11279701_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11276664 - 11279701
Intron Length:
3038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TCCAGTTGAATC
Flanking Amino Acid:
FAIGTALLVEALLGFCLNGL
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.8
38.3
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
47.5
-0.2
2.8
64.1
47.4
Minor BPS
45
-0.4
1.8
50.99
40.8

Associated Gene:

Gene:
RGR
Ensembl Gene ID:
ENSAPLG00000011960
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012458
11276585 - 11291277
14693